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Image Analysis

The CECAD Imaging Facility advises researchers on how to get the information of interest out of their images. For this purpose, we offer two strategies:

  • Application of existing image analysis software
    For many bioimage-related problems a variety of image analysis tools already exists. We support users in the choice of tools and methods that best fit their needs.

    We offer dedicated analysis and processing software on a dedicated analysis station. The following software packages are available in the facility:

Tool

Vendor

Application Example

Huygens Scientific Volume Imaging Image Deconvolution
Imaris Bitplane 3D visualization and analysis visualization (modules: Coloc, MeasurementPro, Track, Vantage, Lineage, FilamentTracer, XT)
Volocity PerkinElmer Multidimensional processing and analysis
SymPhoTime Picoquant Fluorescent lifetime imaging (FLIM) analysis
Matlab Mathworks Programming and visualization environment
FIJI/ImageJ open source image processing and development
OMERO.insight open source Client to access the OMERO image visualization and management server
Cellprofiler open source Versatile image analysis workflow designer
Ilastik open source image classification and segmentation
KNIME open source Data analytics, reporting and integration platform
  • Development of novel image analysis approaches
    In case no appropriate method exists, we can develop tailored image analysis algorithms. These long-term projects are done in a collaboration approach together with the imaging facility.

Dr. Astrid Schauss
Head of Imaging Facility
Tel.  +49 221 478 840 27
aschauss[at]uni-koeln.de

CECAD Cologne / Imaging Facility
CECAD Forschungszentrum
Joseph-Stelzmann-Str. 26
50931 Köln

Astrid Schauss